I had to stop the last step manually.
After checking things over things seem to be working OK, however, I have way too much space taken up, therefore, I did a check and discovered three MYSQL files that I think can be deleted:
#sql-1888_9300.MYD
#sql-1888_9300.MYI
#sql-1888_9300.frm
As I think they are some sort of back-up or something in relaiton to the upgrade, is it OK for me to delete these three files?