This is a PHP Setting that the Test Script is warning you about; your web host would likely have to update for you, unless you can edit values in your PHP.ini through your cPanel. The UBBDev slug about this is available at
UBB.threads System Requirements Test · Wiki - PHP Max Input VarsYou can read about this issue
Issues with the PHP 'max_input_vars' Setting · ArticleIn short the more forums you have the more variables your configuration update will hold when you update the control panel, after the default 2000 is overtaken (I think about 20 some odd forums) it won't submit a complete set of variables.