Let me back step a little bit.
First If you found that file permissions failed in the ubb control panel.
The very first item is to make sure they all are correct now.
And pass.
Second because you had bad file permissions I would open the ubb control panel and select the clear cache option, but don't submit yet.
Then use your ftp program and navigate to the cache folder(not custom builders)
and delete all the files except for the html files.
Then switch back to the ubb control panel and run the clear cache.
That will force all the cache files to be rebuilt as well as knowing that all of them were.
The cache folder holds all of your island scripts and if some are out of sync they won't update correctly after you make changes to them.
